Showing posts with label Adam Rutherford. Show all posts
Showing posts with label Adam Rutherford. Show all posts

2015-03-01

Our notions of "race" and Wittgenstein on "family likenesses"

[Our] craving for generality is the resultant of a number of tendencies connected with particular philosophical confusions. There is- [....] The tendency to look for something in common to all entities which we commonly subsume under a general term.-We are inclined to think that there must be something in common to all games, say, and that this common property is the justification for applying the general term "game" to the various games; whereas games form a family the members of which have family likenesses. [....]

Ludwig Wittgenstein, The Blue Book, pp 17, 18.

There's an excellent piece from Dr Adam Rutherford in in today's Observer: "Why racism is not backed by science"

in it Adam writes:

We now know that the way we talk about race has no scientific validity. There is no genetic basis that corresponds with any particular group of people, no essentialist DNA for black people or white people or anyone. This is not a hippy ideal, it’s a fact. There are genetic characteristics that associate with certain populations, but none of these is exclusive, nor correspond uniquely with any one group that might fit a racial epithet.

Claims like this seem surprising and counter-intuitive to a lot of people, but the science tells us unequivocally that they are true.

As far as I am aware, the philosopher Ludwig Wittgenstein never wrote directly about the biology of "race", but he did have a lot to say about our use of language and the kind of thinking that underlies our use of language. As ever, I make no claims to do justice to his legacy here, but one of his themes has always struck me as being particularly relevant to our confused notions of "race".

Wittgenstein argued that particular instances of things to which general terms - such as "game" - apply, do not necessarily possess any one feature in common but form a group in much the same way as members of an extended family do when considered with respect to their physical appearances - a shared chin shape here, a shared idiosyncrasy there.

[So here we're going to be using a biological metaphor to illustrate a sports metaphor in order to illustrate a general point about our use of language concerning an apparently biological phenomenon, but please bear with me :-)]

If Wittgenstein is right, then it might be possible (in principle at least) to quantify the extent to which "family likeness" is shared between different particular cases. If we were to label the various features of particular cases of a general term with letters of the alphabet we might come up with something like the following (this is my example not Ludwig's):

  1. ABCKL
  2. ABCDF
  3. ABCGE
  4. ABHDE
  5. ABCDE
  6. AICDE
  7. JBCDE
  8. ABMNE
  9. AOPDE

These nine entities form a group, from which (given no further information) we should almost certainly exclude an entity such as "VWXYZ", and yet these entities have no one feature in common. Entity number one shares three features with three other entities, two features with four other entities, and one feature with one other entity. Entity number three shares four features with one other entity, three features with six other entities, and two features with one other entity. By counting the number of other entities with whom a feature is shared, and adding these numbers together for each entity it would be possible to calculate a "coefficient of shared features" for each entity. In the example provided, the coefficients would be as follows:

  1. 18
  2. 23
  3. 24
  4. 24
  5. 29
  6. 23
  7. 22
  8. 19
  9. 18

It now becomes clear (as could probably have been guessed by simply looking at the example presented) that entity number five shares its features more widely than any other member of the group. If the entities in question were games, then number five might be cricket (which has most features we normally associate with games) and number one might be frisbee (which has players and equipment, but no formal rules, no competition, and no winning or losing*). Whether playing frisbee should be called a "true" game is the kind of issue over which we could imagine disputes. An activity such as cricket (some other examples would serve equally well) is not only secure from such controversy, it actually belongs to the very heart of the concept of game playing**. In the same way, entity number five enjoys a distinct centrality within the family of entities to which it belongs. (Conveniently, in the above presentation, entity number five is also centrally positioned). It is number five which we should choose if asked to pick one example from the above group to serve as a paradigm.

Analysing general terms in this way sheds light on why we have concepts of "racial groups" and think we can describe paradigm examples of members of those "groups" - a "typical negro", a "typical caucasian", or whatever - even though there are no genes which are unique to people we would tend to classify as "black" or "white" or "asian". Even the outward indicators of race: curly or straight hair, dark or light skin, eyes with or without epicanthic folds etc (let alone the complex genetics that underlie such traits) are spread across many different population groups that are often seen as distinct "races".

Let us give Wittgenstein the final word:

There is a tendency [....] to think that the man who has learnt to understand a general term, say the term "leaf", has thereby come to possess a kind of general picture of a leaf, as opposed to pictures of particular leaves. [....]

Instead of "craving for generality" I could have said "the contemptuous attitude towards the particular case".





* This may have changed of course, but it was true in my day :-)

** Even though I have no idea whatsoever what is going on when I watch a game of cricket.

2013-11-14

The Extremes of Creation or the Creation of Extremes (Christmas is coming & there are excellent books to be had)



The Ramble

I had planned to write two separate posts (I’m not sure my ramblings below quite merit the description of “reviews”) on these two books but they both arrived on my door mat around the same time, I have some similar things to say about both books (and their authors), and, if you select one on Amazon, the other pops up as a recommendation and you can buy the pair for a reduced price. Here, then, is my two for the price of one offer.

My first, and only (until now), attempt at posting my thoughts on a book I had read was not, I fear, an unbridled source of joy for the author. He obviously skim-read my post and decided it was a hagiography and tweeted lots of nice things back. He then, apparently, re-read my post (just as hurriedly) and decided it was a hatchet-job and promptly deleted all his nice tweets. In fact my post was a well-balanced mixture of high praise and trenchant criticism.

Spoiler alert:

This time round I have only nice things to say about my target books and their authors.

But first some personal history:

A long long time ago in this very universe, I went to university and studied biochemistry and genetics. After a year’s research work at Newcastle University I got my first permanent job at Northwick Park Hospital in Harrow. For various reasons, I hated it. The final straw came when one day, during the coffee break, my boss picked up the Daily Mail (they were all graduates, PhDs, clinicians, professors even; but they all seemed to read the Daily Mail) and read out one of their ghastly headlines to the assembled company of coffee drinkers – something about brown people coming in droves to “our” country to sponge off “our” benefits while taking all “our” jobs and giving us all cancer. Everyone in the room (bar me) tutted and shook their heads in disapproval. I regret to this day not having had the courage to stand up and shout “for fuck’s sake you don’t actually believe this shite do you?”, but I just slunk quietly out of the room.

I quit my science job, studied philosophy, and then philosophy of science and somehow ended up in an obscure field of IT. I’ve certainly had an interesting career. But I’ve always missed science and always tried to keep up with what was going on – mainly by reading popular science literature (a couple of examples of which I am, don’t worry, eventually going to get round to discussing).

To come finally to the point, in my day, all the cool people (or so it seemed at the time) were doing philosophy and social science and politics; and all the people doing science were irredeemably uncool.

Now, quite suddenly there seems to be a whole new generation of astonishingly cool, media savvy, young science communicators out there who don’t seem to read the Daily Mail. I consider myself privileged to have lived long enough to witness such a thing. It has made the job of passing on a love of (or at least respect for) science to my two kids so much easier and has enriched my own life to an (to me) unexpected extent.

So today I wish to pay my respects to the writing efforts of two members of this new generation: Adam Rutherford (geneticist) and Kevin Fong (space doctor). Both have combined successful endeavours in their chosen disciplines with successful careers as science presenters – being good at doing science is (I have often had cause to reflect) no guarantee whatsoever of being good at communicating the subject.

Actually (sorry Adam and Kevin) I think my favourite TV science presenter and science writer of all is (Adam Rutherford’s mentor) Steve Jones, but even he wasn’t on TV in my day and (sorry Steve) isn’t anything like as photogenic as Adam and Kevin. Steve J may appeal to old gits like me but is, I suspect, somewhat less likely to appeal to a younger generation.

The Books

Both Kevin and Adam have recycled some of the material they presented in their excellent TV programmes in their books. Though I watched both these series, as someone who almost always gets disturbed during TV programmes by cats and/or kids and/or spousal demands for cups of tea, and as someone who tends to forget most of what I do see on TV, I did not find this any kind of impediment to my enjoyment of the books.

While there are – as I’ve repeatedly noted – various parallels that can be drawn here, the two books could hardly be less similar. Kevin Fong’s book Extremes is, I suppose you could say, a slightly odd collage of autobiography, physiology, and medical anecdote; but this description utterly fails to do it justice. After the first few paragraphs you are completely hooked. Extremes grips you like a thriller. Actually I’ve never read a thriller. I once read a “whodunit” and was little wiser even after I’d got to the dénouement. But my point is that the book is amazingly readable and exciting and (unlike my whodunit – at least when it was uploaded into my cerebellum) knits (what might seem at first blush, to be) a disparate set of themes into a fully coherent piece of writing.

The writing has a beautiful economy of style. There is no redundancy or unnecessary verbiage in Kevin Fong’s prose and he discusses some astonishingly heart-rending and moving events while steering well clear of any sentimentality or sensationalism or ghoulishness.

There is nothing in the book to scare even the most hard-core science-phobe and even the most hard-core science-phile will still learn a thing or two and enjoy it immensely. Both groups will be moved to tears on several occasions.

Adam Rutherford’s book will, I suppose, scare some people[1]; but, if you are one of those people, it is worth your while to overcome your fears.

The book addresses probably the two most fascinating questions concerning life: where did it come from and where is it going? It addresses these questions from the point of view of the science of Genetics.

The answer to first question is, in a sense, of limited scientific value. We shall almost certainly never know for certain how life got going on our planet and (spoiler alert) we know that it did. But figuring out how nature could have got round the Catch 22 of abiogenesis (a code of life – qua life – requires a system that can read and replicate that code; a system that can read and replicate a code must itself be the result of reading and acting upon a code) is one of those questions that seems (to me at least) entirely worth pursuing for its own sake. And, in the second part of Adam’s book, we begin to see how attempts to answer such fundamental questions may have all kinds of practical implications in the longer term. Again (yet another spoiler alert) Adam Rutherford explains how the pieces of the puzzle have begun to fall into place and relates experiments that have provided an wonderful solution to the central Catch 22 described above.

The answers provided to the second question in Adam Rutherford’s book (Where is life going?) involve not dire speculation about a Frankensteinian (is there such a word?) future but a detailed examination of some quite incredible developments in our understanding of how genetic mechanisms work and how we can use our new understanding to manipulate and modify those mechanism – and even come up with our own novel variations.

While Adam Rutherford’s book is extremely well written, his prose is (it has to be admitted) much denser than the prose in Extremes – “dense” in the sense that there is often a lot of information packed into short runs of text. (Again, I’m not criticising here, merely suggesting that you should save your glass of wine for after reading each chapter rather than drinking it at the same time. Such self-denial will pay dividends if you wish to get the most out of this book. Please note, I’m not hereby suggesting that it is okay to read Kevin Fong’s while completely trolleyed. And, out of deference to Kevin’s genetics – which make it a bad idea for him to get completely trolleyed – I read Kevin’s book while never fortifying myself with anything stronger than a cup of tea. But I digress once again.)

But there are some quite astonishingly fun aspects of Adam Rutherford’s book too:

  1. The outermost blank pages (there’s probably a technical term for these [2]) of the hardback edition (I’ve not seen the softback yet) come in colours that make Las Vegas on acid seem subdued. Just opening the book without sunglasses on made my retinas bleed. If Adam Rutherford thinks these colours anything other than highly alarming, he needs to get his OPN1LW and OPN1MW genes checked out.
  2. The two halves of the book are opposite ways up – you read about the origin of life from one end and then have to turn it the other way up to read about the future of life from the other end. Whichever way you put it on your bookshelf, it looks the wrong way up when viewed from the wrong side.
  3. It contains hidden references to cinema films – another of Adam Rutherford’s passions.
So if forced to choose one of these two books, Extremes or Creation, for Christmas this year, which should you go for?

My unequivocal answer:

Fuck it, they’re both out in paperback [3]. Get them both!




[1] The cover even scared me.

[2] It seems they are called "end papers" - thanks to @Suw (on Twitter) for that information.

[3] It also seems that Creation doesn't come out in softback until February 6th - thanks to @AdamRutherford (on Twitter) for that information.

2011-04-19

The not so earnest Adam Rutherford (no relation) on genes rather than physics


There will inevitably be silly comparisons drawn between Brian Cox’s big budget Wonders series and Rutherford’s somewhat lower budget Gene Code, but we should treat all such comments with the contempt they deserve. There’s room in the modern digital schedules for science programmes of every genre and cost from 1970s OU style chalk and talk lectures (though preferably without the big ties) through to the cinematic grandeur of Brian’s efforts [my take on #wonders media coverage].

We should rejoice in all of these attempts to use the medium of television to educate us – while, one also hopes, entertaining us.

While I also love considering the profound questions thrown up by quantum theory, relativity, and cosmology, you have to admit that modern physics is a bit fucking weird. My original background was in genetics and biochemistry (though both sciences have come on a lot since I studied them and I can’t claim to have studied them very hard) and I had been really looking forward to being entertained by Adam’s Rutherford’s series safe in the knowledge that he was not going to come on and open with something like: “Ever since scientists first started looking at chromosomes they have wondered whether chromosomes go on for ever or if the two ends join up again in the 57th dimension”. You know that genes, at least, are something you can try get your brain around without giving yourself a migraine. But that is not to say there’s anything easy about genes. If physics is like an old fashioned library (albeit an old fashioned library stocked with some pretty queer books) genetics is like the internet.

Whether you know a little or a lot about genetics (providing you have a sense of curiosity about the worlds within us and without us) you will enjoy The Gene Code and I urge you to watch it.

Here (if anyone’s interested) is what I took away from the first episode……..

First a bit of basic genetics: The master tape of instructions for what goes on inside our cells is (as most are probably aware) a series of long strands of DNA (AKA “chromosomes”). From these master copies, our cells make lots of RNA copies (a bit like the building contractor keeping the approved drawings safe in a locked draw and making lots of slightly dodgy photocopies to hand round to the builders on site). From these RNA copies of the genetic code, our cells make proteins. Proteins serve two main functions in our bodies: they can be structural (like the proteins that make up our muscles) or regulatory (like the enzymes – which are also proteins – that make things happen inside – and sometimes outside – our cells).

The understanding described above gave rise to Francis Crick’s “central dogma of molecular biology” [see here for eg] which is that (though there are different formulations) “information flows from DNA to RNA to protein”.

Information flow:
DNA -> RNA -> Protein


Now here’s the wonderful thing about science: Almost before the ink was dry on the first statement of this “dogma”, scientists (including Crick himself) begun to make discoveries that (kind of) challenged it. Contrast this with what happens vis-à-vis the central dogmas of any religion or “alternative” medicine one might care to think of.

Proteins (called “polymerases”) can duplicate strands of DNA and RNA, so information can flow from DNA to DNA and from RNA to RNA.

Other proteins (“reverse transcriptases”) can make DNA from RNA – a mechanism used by some viruses such as HIV - so information can flow from RNA to DNA.

With the emergence of “Mad Cow Disease” and the flurry of research into prion proteins that episode prompted, came confirmation (long suspected – arguably from as long ago as the 1930s) that information can flow from protein to protein.

Proteins can also, it has been discovered, bind to chromosomes and “switch” sections of DNA on and off and those switch positions can be inherited. This is not quite information flowing from protein to DNA, but it’s pretty damn close.

What made me sit up straight in my chair watching The Gene Code was Adam Rutherford’s report of recent discoveries concerning a gene that is (or was) responsible for changing the positions of recombination “hotspots” (the points at which, as Adam splendidly demonstrated using only a pack of cards, chromosomes from each parent break and join with one another to swap sequences of DNA) from the positions where those hotspots existed in the human/chimp common ancestor.

It turns out (Thx @AdamRutherford on Twitter) that the gene in question produces a protein that helps to cause DNA mutations that lead to the hotspot position changes. But these are permanent changes to the DNA sequence that are occasioned by the protein product of another gene.

So is this a case of information flowing from protein to DNA? Not sure myself. It’s an essentially philosophical question and I would need to think about it some more. But it’s certainly fascinating – well at least to a nerd like me.

So next time you read that “boffins have discovered the gene for Daily Mail allergy” (or whatever) please bear in mind that it’s almost certainly a bit more complicated than that – and more interesting too.

Oh and watch next week (2011 April 25) at 09:00 pm on BBC4, and let’s have even more science on TV.

[show times for the gene code]